Original articles in indexed journals - Structural Bioinformatics

Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Backup in gene regulatory networks explains differences between binding and knockout results. Mol Syst Biol. 2009;5:276. PMID: 19536199 . DOI: 10.1038.

2009

Original articles in indexed journals - Structural Bioinformatics

Fornes O, Aragues R, Espadaler J, Marti-Renom MA, Sali A, Oliva B. ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics, 2009;25(12):1506-12. PMID: 19357100 . DOI: 10.1093.

2009

Original articles in indexed journals - Structural Bioinformatics

Cuesta AM, Sánchez-Martín D, Sanz L, Bonet J, Compte M, Kremer L, Blanco FJ, Oliva B, Alvarez-Vallina L. In vivo tumor targeting and imaging with engineered trivalent antibody fragments containing collagen-derived sequences. PLoS One. 2009;4(4):e5381. PMID: 19401768 . DOI: 10.1371/journal.pone.0005381.

2009

Original articles in indexed journals - Structural Bioinformatics - Computational Biochemistry

Scheper J, Oliva B, Villa-Freixa J, Thomson TM. Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. Proteins, 2009; 74(1): 92-103. PMID: 18615712 . DOI: 10.1002/prot.22120.

2009

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Hofmann-Apitius M, Fluck J, Furlong L, Fornes O, Kolárik C, Hanser S, Boeker M, Schulz S, Sanz F, Klinger R, Mevissen T, Gattermayer T, Oliva B, Friedrich CM. Knowledge environments representing molecular entities for the virtual physiological human. Philos Trans R Soc Lond A. 2008 Sep;366(1878):3091–110. . PMID: 18559317 . DOI: 10.1098.

2008

Original articles in indexed journals - Structural Bioinformatics

Martín B, Sanz R, Aragüés R, Oliva B, Sierra A. Functional clustering of metastasis proteins describes plastic adaption resources of breast-cancer cells to new microenvironments. J Proteome Res. 2008;7(8)3242-53.. PMID: 18582095 .

2008

Other - Structural Bioinformatics

Aragüés R, García-García J, Oliva B. Integration and prediction of PPI using multiple resources from public databases. J Proteomics and Bioinformatics. 2008 Jul;1:166-187.

2008

Original articles in indexed journals - Structural Bioinformatics

Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F. Beyond tissueInfo: functional prediction using tissue expression profile similarity searches. Nucleid Acids Res. 2008 Jun;36(11):3728-37.. PMID: 18483083 .

2008

Original articles in indexed journals - Structural Bioinformatics

Espadaler J, Eswar N, Querol E, Avilés FX, Sali A, Marti-Renom MA, Oliva B. Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinformatics. 2008 May;9:249.. PMID: 18505562 .

2008

Original articles in indexed journals - Structural Bioinformatics - Systems Pharmacology

van Mulligen EM, Cases M, Hettne K, Molero E, Weeber M, Robertson KA, Oliva B, de la Calle G, Maojo V. Training Multidisciplinary Biomedical Informatics Students: Three Years of Experience. J Am Med Inf Assoc 2008;15(2):246-254. PMID: 18096914 . DOI: 10.1197/jamia.M2488.

2008