Original articles in indexed journals - Computational RNA Biology

Ruiz-Reche A, Srivastava A, Indi JA, de la Rubia I, Eyras E. ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning. Genome Biol, 2019; 20(1): 260. PMID: 31783882 . DOI: 10.1186/s13059-019-1884-z.

2019

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Conserved regions in long non-coding RNAs contain abundant translation and protein-RNA interaction signatures. Nucleic Acids Research Genomics and Bioinformatics, 2019; 1; 1: e2 DOI: 10.1093/nargab/lqz002.

2019

Original articles in indexed journals - NeuroGenomics

Muchnik SK, Lorente-Galdos B, Santpere G, Sestan N. Modeling the Evolution of Human Brain Development Using Organoids. Cell, 2019; 179 (6), 1250-1253. PMID: 31778651 . DOI: 10.1016/j.cell.2019.10.041.

2019

Original articles in indexed journals - Structural Bioinformatics

Aguilar D, Lemonnier N, Koppelman GH, Melén E, Oliva B, Pinart M, Guerra S, Bousquet J, Anto JM. Understanding allergic multimorbidity within the non-eosinophilic interactome. PLoS One, 2019; 14(11): e0224448. PMID: 31693680 . DOI: 10.1371/journal.pone.0224448.

2019

Original articles in indexed journals - Computational Science

Lovera S^*, Cuzzolin A, Kelm S, de Fabritiis G, Sands ZA^*. Reconstruction of apo A2A receptor activation pathways reveal ligand-competent intermediates and state-dependent cholesterol hotspots. Sci Rep 2019; 9: 14199.. PMID: 31578448 . DOI: 10.1038/s41598-019-50752-6.

2019

Original articles in indexed journals - Computational Science

Jiménez-Luna J, Pérez-Benito L, Martínez-Rosell G, Sciabola S, Torella R, Tresadern G, De Fabritiis G. DeltaDelta neural networks for lead optimization of small molecule potency. Chem Sci, 2019; 10 (47): 10911-10918 DOI: 10.1039/C9SC04606B.

2019

Original articles in indexed journals - NeuroGenomics

Giusti-Rodríguez P, Lu L, Yang Y, Crowley CA, Liu X, Bryois J, Juric I et al (including Santpere G). Schizophrenia and a high-resolution map of the three-dimensional chromatin interactome of adult and fetal cortex. bioRxiv, 2019 DOI: 10.1101/406330.

2019

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Llopis J, Cano J, Gomis-Tena J, Romero L, Sanz F, Pastor M, Trenor B, Saiz J. In silico assay for preclinical assessment of drug proarrhythmicity. J Pharmacol Toxicol Methods, 2019 ;99: 106595. PMID: 31962986 . DOI: 10.1016/j.vascn.2019.05.106.

2019

Original articles in indexed journals - Systems Pharmacology

Olivés J, Mestres J. Closing the Gap between Therapeutic Use and Mode of Action in Remedial Herbs. Front Pharmacol, 2019; 10: 1132. PMID: 31632273 . DOI: 10.3389/fphar.2019.01132.

2019

Original articles in indexed journals - Computational Science

Skalic M, Sabbadin D, Sattarov B, Sciabola S, De Fabritiis G. From Target to Drug: Generative Modeling for Multimodal Structure-Based Ligand Design. Mol Pharm. 2019; 16(10): 4282-4291. PMID: 31437001 . DOI: 10.1021/acs.molpharmaceut.9b00634.

2019